Workflow 1: Literature Review Sweep
- Run
search_literature_graphwith a focused query and year range. - Refine with
sourcesandfields_of_studyif result quality is mixed. - Use
search_google_scholar_advancedwhen you need stricter author/year/phrase filtering. - Save shortlisted papers for ingestion.
Both search tools accept year_range as an object. Arrays are no longer
accepted by the MCP schema:
{
"query": "retrieval-augmented generation",
"year_range": { "start": 2022, "end": 2026 },
"limit": 15
}
start must not exceed end. Federated search reports provider failures in
providerErrors, so inspect that field before treating partial results as a
complete search.
Prompt example:
Find 15 papers from 2022-2026 on retrieval-augmented generation evaluation methods. Prioritize benchmark-heavy studies.
Workflow 2: Full-Text Extraction Pipeline
- Start ingestion with
ingest_paper_fulltextusing DOI, paper URL, direct PDF URL, or local PDF path. - Poll with
get_ingestion_statusuntilsucceededorfailed; inspecterroron failure. - Extract structured outputs with
extract_granular_paper_details. - Use extracted claims, methods, and limitations in your notes or draft.
Prompt example:
Ingest DOI
10.1038/s41467-024-55563-6, wait until complete, then extract methods, datasets, and limitations.
Workflow 3: Citation Support for Drafts
- Feed manuscript text into
suggest_contextual_citations. - Generate formatted references via
build_reference_list. - Validate inline citations and references using
validate_manuscript_citations. - Iterate until missing/duplicate citation issues are resolved.
Citation validation checks supported numeric and parenthetical author-year patterns. It is a consistency check, not evidence that a paper supports a claim. Review the suggested sources and bibliography before using them in a manuscript.
Prompt example:
Suggest citations for this draft section in IEEE style, then build BibTeX and validate consistency.
Workflow 4: Author-Centric Discovery
- Use
get_author_infoto resolve the author and top publications. - Expand from those publications using
search_literature_graph. - Ingest the highest-value papers and extract structured summaries.